ARIEL

Contents:

  • Installation and Usage
    • Installation
    • Usage
    • DLPFC(Alignment)
    • Hippocampus
    • Brain
    • Hepatic lobule
  • DEMO: DLPFC
    • Spatial alignment result under different landmark number
      • ARIEL with 5 landmarks
      • ARIEL with 10 landmarks
      • ARIEL with 15 landmarks
      • ARIEL with 20 landmarks
      • ARIEL with 25 landmarks
      • ARIEL with 30 landmarks
      • ARIEL with 35 landmarks
      • ARIEL with 40 landmarks
      • ARIEL with 45 landmarks
      • ARIEL with 50 landmarks
    • Change coordinate system and use ARIEL to align the samples
      • Alignmnet after rotating the query sample by 90 degrees
      • Alignmnet after rotating the query sample by 180 degrees
      • Alignmnet after rotating the query sample by 270 degrees
      • Alignmnet after horizontally mirroring the query sample
      • Alignmnet after vertically mirroring the query sample
  • DEMO: Hippocampus
    • ARIEL
      • slice2 to reference(slice1)
        • Select landmarks
        • Alignment
        • Information Transfer
      • slice3 to reference(slice1)
        • Select landmarks
        • Alignment
        • Information Transfer
      • Gaussian Process Rrgression for reference
    • Results and downstream works
      • Alignment results
      • Transfer results
      • Spatial composite expression profiles
      • Clustering
  • DEMO: Brain
    • ARIEL
      • Select landmarks
      • Alignment
      • Information transfer
        • STARmap to RIBOmap
    • Downstream works(Protein Prediction)
      • Strategy 1 (Random missing)
        • Comparison
      • Strategy 2 (block-wise missing)
        • ARIEL (Using transferred STARmap information to predict the protein information in testing region)
        • Baseline (Using gaussian process regression to impute the protein information in the testing region)
        • Comparison
  • DEMO: Hepatic lobule
    • COSMX
      • Select landmarks
        • slice 2 to reference(slice 1)
        • slice3 to reference(slice 1)
        • slice4 to reference(slice 1)
        • slice5 to reference(slice 1)
        • slice6 to reference(slice 1)
        • slice7 to reference(slice 1)
        • slice8 to reference(slice 1)
        • slice9 to reference(slice 1)
        • slice10 to reference(slice 1)
        • Landmark results
        • Landmark library
        • Redefine the hepatic lobule
      • Alignment
        • Rigid alignment
        • Non-rigid alignment
      • Information transfer
      • Spatial composite expression profiles
    • Two new Visium liver (different health states)
      • Select landmarks and find hepatic lobule in Visium slice
      • Alignment
      • Information transfer
      • Find suspicious genes
ARIEL
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© Copyright 2025, Yang Wanshuo, Yin Jun.

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