ARIEL
Contents:
Installation and Usage
Installation
Usage
DLPFC(Alignment)
Hippocampus
Brain
Hepatic lobule
DEMO: DLPFC
Spatial alignment result under different landmark number
ARIEL with 5 landmarks
ARIEL with 10 landmarks
ARIEL with 15 landmarks
ARIEL with 20 landmarks
ARIEL with 25 landmarks
ARIEL with 30 landmarks
ARIEL with 35 landmarks
ARIEL with 40 landmarks
ARIEL with 45 landmarks
ARIEL with 50 landmarks
Change coordinate system and use ARIEL to align the samples
Alignmnet after rotating the query sample by 90 degrees
Alignmnet after rotating the query sample by 180 degrees
Alignmnet after rotating the query sample by 270 degrees
Alignmnet after horizontally mirroring the query sample
Alignmnet after vertically mirroring the query sample
DEMO: Hippocampus
ARIEL
slice2 to reference(slice1)
Select landmarks
Alignment
Information Transfer
slice3 to reference(slice1)
Select landmarks
Alignment
Information Transfer
Gaussian Process Rrgression for reference
Results and downstream works
Alignment results
Transfer results
Spatial composite expression profiles
Clustering
DEMO: Brain
ARIEL
Select landmarks
Alignment
Information transfer
STARmap to RIBOmap
Downstream works(Protein Prediction)
Strategy 1 (Random missing)
Comparison
Strategy 2 (block-wise missing)
ARIEL (Using transferred STARmap information to predict the protein information in testing region)
Baseline (Using gaussian process regression to impute the protein information in the testing region)
Comparison
DEMO: Hepatic lobule
COSMX
Select landmarks
slice 2 to reference(slice 1)
slice3 to reference(slice 1)
slice4 to reference(slice 1)
slice5 to reference(slice 1)
slice6 to reference(slice 1)
slice7 to reference(slice 1)
slice8 to reference(slice 1)
slice9 to reference(slice 1)
slice10 to reference(slice 1)
Landmark results
Landmark library
Redefine the hepatic lobule
Alignment
Rigid alignment
Non-rigid alignment
Information transfer
Spatial composite expression profiles
Two new Visium liver (different health states)
Select landmarks and find hepatic lobule in Visium slice
Alignment
Information transfer
Find suspicious genes
ARIEL
Index
Index